useful links

Software

Dendroscope: Making phylogenetic trees

ApE: A plasmid editor 

Genes to Proteins

Clustal Omega: Sequence alignment tool

Cobalt: Multiple alignment tool

Unigene: Tissue expression by tissue and age

Expression and Phenotype

Expression atlas

KOMP: Knock-out mouse project repository

ExPASy: Bioinformatics resource portal

BLAST: Finds similarity between sequences

BioGRID: Biological interactions

UniProt: Protein sequence and function

TMpred: Predicts transmembrane domains 

Literature Searches

Pubmed

Google Scholar

 

Consurf: Identifies functional regions in proteins

Protein data bank: Portal to protein macromolecular structures

Lab Bench

Double Digest Finder

DNA tools: Removes numbers and spaces from DNA sequences